Aborted (core dumped) — Installing packages in R — R version 3.0.2 / Ubuntu 14.04 LTS
I am quite new with Ubuntu and R and I have just installed them both a couple of days back. After installing R and Rstudio successfully, I wanted to install the R package swirl with the command:
Aborted (core dumped) Warning in install.packages : installation of package ‘digest’ had non-zero exit status *** buffer overflow detected ***: /usr/lib/R/bin/exec/R terminated ======= Backtrace: ========= /lib/x86_64-linux-gnu/libc.so.6(+0x741cf)[0x7f128b51e1cf] /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f128b5b5b2c] /lib/x86_64-linux-gnu/libc.so.6(+0x10a9f0)[0x7f128b5b49f0] /lib/x86_64-linux-gnu/libc.so.6(+0x10cd6a)[0x7f128b5b6d6a] /usr/lib/R/lib/libR.so(+0x926c4)[0x7f128bb206c4] /usr/lib/R/lib/libR.so(+0x9446b)[0x7f128bb2246b] /usr/lib/R/lib/libR.so(+0xdcddb)[0x7f128bb6addb] /usr/lib/R/lib/libR.so(Rf_eval+0xf8)[0x7f128bb72d98] /usr/lib/R/lib/libR.so(Rf_applyClosure+0x346)[0x7f128bb74056] . And there are thousands of more code lines. This happened too with Rcurl , testthat and httr continuously. While this is happening, Rstudio seems to overload and turns grey. It all ends with the this code line:
Aborted (core dumped) Warning in install.packages : installation of package ‘swirl’ had non-zero exit status The downloaded source packages are in ‘/tmp/RtmpTdWj6H/downloaded_packages’ I think this might have to do with the memory of my computer. These are the specs: Acer aspire V5-572G-6679 Memory: 5.7GiB Processor: Intel® Core™ i5-3337U CPU @ 1.80GHz × 4 Disk: 500 GB Needless to say that when I call swirl from the library it does not work.
library(swirl) Error in library(swirl) : there is no package called ‘swirl’ I’ve tried installing the packages manually but the same problem persists; Aborted(core dumped) Any idea how I can fix this?
gnuplot : Aborted (core dumped)
I just now installed gnuplot 4.6.6 on my Ubuntu 14.04 from the source by using standard configure make make install . But I am not able to plot anything after that. Something like this happens:
gnuplot> pl x Aborted (core dumped) I couldn’t find any solution online for this particular problem. Any ideas? Thanks in advance. Edit : I wrote the same command in text file and tried running gnuplot on that file with:
Fatal Error: Mismatch between the program and library build versions detected. The library used 2.8 (no debug,Unicode,compiler with C++ ABI 1002,wx containers,compatible with 2.6), and your program used 2.8 (no debug,Unicode,compiler with C++ ABI 1009,wx containers,compatible with 2.6). linux-gate.so.1 => (0xb7729000) libreadline.so.6 => /lib/i386-linux-gnu/libreadline.so.6 (0xb76ca000) libgd.so.3 => /usr/lib/i386-linux-gnu/libgd.so.3 (0xb7664000) liblua5.1.so.0 => /usr/lib/i386-linux-gnu/liblua5.1.so.0 (0xb7635000) libwx_gtk2u_core-2.8.so.0 => /usr/lib/i386-linux-gnu/libwx_gtk2u_core-2.8.so.0 (0xb7303000) libwx_baseu-2.8.so.0 => /usr/lib/i386-linux-gnu/libwx_baseu-2.8.so.0 (0xb71bf000) libpangocairo-1.0.so.0 => /usr/lib/i386-linux-gnu/libpangocairo-1.0.so.0 (0xb71b2000) libpango-1.0.so.0 => /usr/lib/i386-linux-gnu/libpango-1.0.so.0 (0xb7165000) libcairo.so.2 => /usr/lib/i386-linux-gnu/libcairo.so.2 (0xb7041000) libgobject-2.0.so.0 => /usr/lib/i386-linux-gnu/libgobject-2.0.so.0 (0xb6fef000) libglib-2.0.so.0 => /lib/i386-linux-gnu/libglib-2.0.so.0 (0xb6ee3000) libgdk-x11-2.0.so.0 => /usr/lib/i386-linux-gnu/libgdk-x11-2.0.so.0 (0xb6e34000) libstdc++.so.6 => /usr/lib/i386-linux-gnu/libstdc++.so.6 (0xb6d2c000) libm.so.6 => /lib/i386-linux-gnu/libm.so.6 (0xb6ce5000) libgcc_s.so.1 => /lib/i386-linux-gnu/libgcc_s.so.1 (0xb6cc7000) libpthread.so.0 => /lib/i386-linux-gnu/libpthread.so.0 (0xb6cab000) libc.so.6 => /lib/i386-linux-gnu/libc.so.6 (0xb6afc000) libtinfo.so.5 => /lib/i386-linux-gnu/libtinfo.so.5 (0xb6ada000) libjpeg.so.8 => /usr/lib/i386-linux-gnu/libjpeg.so.8 (0xb6a7e000) libz.so.1 => /lib/i386-linux-gnu/libz.so.1 (0xb6a64000) libpng12.so.0 => /lib/i386-linux-gnu/libpng12.so.0 (0xb6a3c000) libfreetype.so.6 => /usr/lib/i386-linux-gnu/libfreetype.so.6 (0xb699c000) libfontconfig.so.1 => /usr/lib/i386-linux-gnu/libfontconfig.so.1 (0xb6961000) libXpm.so.4 => /usr/lib/i386-linux-gnu/libXpm.so.4 (0xb694e000) libvpx.so.1 => /usr/lib/i386-linux-gnu/libvpx.so.1 (0xb677d000) libtiff.so.5 => /usr/lib/i386-linux-gnu/libtiff.so.5 (0xb6709000) libdl.so.2 => /lib/i386-linux-gnu/libdl.so.2 (0xb6704000) libgtk-x11-2.0.so.0 => /usr/lib/i386-linux-gnu/libgtk-x11-2.0.so.0 (0xb6294000) libgdk_pixbuf-2.0.so.0 => /usr/lib/i386-linux-gnu/libgdk_pixbuf-2.0.so.0 (0xb6270000) libXinerama.so.1 => /usr/lib/i386-linux-gnu/libXinerama.so.1 (0xb626c000) libXxf86vm.so.1 => /usr/lib/i386-linux-gnu/libXxf86vm.so.1 (0xb6266000) libSM.so.6 => /usr/lib/i386-linux-gnu/libSM.so.6 (0xb625d000) libpangoft2-1.0.so.0 => /usr/lib/i386-linux-gnu/libpangoft2-1.0.so.0 (0xb6247000) libgmodule-2.0.so.0 => /usr/lib/i386-linux-gnu/libgmodule-2.0.so.0 (0xb6241000) libthai.so.0 => /usr/lib/i386-linux-gnu/libthai.so.0 (0xb6237000) libpixman-1.so.0 => /usr/lib/i386-linux-gnu/libpixman-1.so.0 (0xb618e000) libxcb-shm.so.0 => /usr/lib/i386-linux-gnu/libxcb-shm.so.0 (0xb618a000) libxcb-render.so.0 => /usr/lib/i386-linux-gnu/libxcb-render.so.0 (0xb6180000) libxcb.so.1 => /usr/lib/i386-linux-gnu/libxcb.so.1 (0xb615d000) libXrender.so.1 => /usr/lib/i386-linux-gnu/libXrender.so.1 (0xb6152000) libX11.so.6 => /usr/lib/i386-linux-gnu/libX11.so.6 (0xb601e000) libXext.so.6 => /usr/lib/i386-linux-gnu/libXext.so.6 (0xb600b000) librt.so.1 => /lib/i386-linux-gnu/librt.so.1 (0xb6002000) libffi.so.6 => /usr/lib/i386-linux-gnu/libffi.so.6 (0xb5ffa000) libpcre.so.3 => /lib/i386-linux-gnu/libpcre.so.3 (0xb5fbc000) libgio-2.0.so.0 => /usr/lib/i386-linux-gnu/libgio-2.0.so.0 (0xb5e3b000) libXi.so.6 => /usr/lib/i386-linux-gnu/libXi.so.6 (0xb5e2b000) libXrandr.so.2 => /usr/lib/i386-linux-gnu/libXrandr.so.2 (0xb5e20000) libXcursor.so.1 => /usr/lib/i386-linux-gnu/libXcursor.so.1 (0xb5e14000) libXcomposite.so.1 => /usr/lib/i386-linux-gnu/libXcomposite.so.1 (0xb5e10000) libXdamage.so.1 => /usr/lib/i386-linux-gnu/libXdamage.so.1 (0xb5e0c000) libXfixes.so.3 => /usr/lib/i386-linux-gnu/libXfixes.so.3 (0xb5e06000) /lib/ld-linux.so.2 (0xb772a000) libexpat.so.1 => /lib/i386-linux-gnu/libexpat.so.1 (0xb5ddd000) liblzma.so.5 => /lib/i386-linux-gnu/liblzma.so.5 (0xb5db6000) libjbig.so.0 => /usr/lib/i386-linux-gnu/libjbig.so.0 (0xb5da7000) libatk-1.0.so.0 => /usr/lib/i386-linux-gnu/libatk-1.0.so.0 (0xb5d86000) libICE.so.6 => /usr/lib/i386-linux-gnu/libICE.so.6 (0xb5d6c000) libuuid.so.1 => /lib/i386-linux-gnu/libuuid.so.1 (0xb5d65000) libharfbuzz.so.0 => /usr/lib/i386-linux-gnu/libharfbuzz.so.0 (0xb5d0e000) libdatrie.so.1 => /usr/lib/i386-linux-gnu/libdatrie.so.1 (0xb5d05000) libXau.so.6 => /usr/lib/i386-linux-gnu/libXau.so.6 (0xb5d01000) libXdmcp.so.6 => /usr/lib/i386-linux-gnu/libXdmcp.so.6 (0xb5cfa000) libselinux.so.1 => /lib/i386-linux-gnu/libselinux.so.1 (0xb5cd6000) libresolv.so.2 => /lib/i386-linux-gnu/libresolv.so.2 (0xb5cbe000) libgraphite2.so.3 => /usr/lib/i386-linux-gnu/libgraphite2.so.3 (0xb5c98000)