Linux high load no cpu

top shows high user-space CPU utilization but all the process show 0

Any ideas on why the load would be through the roof, top shows each CPU user-space utilization at 85% or higher, yet no process is tagged with any CPU utilization? First time I’ve ever seen this. We’ve got a server that has a load average of 20, and the break down on each CPU is extremely high (>85%), yet none of the processes in the list have any CPU % utilization. Here’s a sample, and yes, this is with the processes sorted from highest to lowest CPU utilization — every once in a blue moon we’ll actually see a process that shows «1» as the CPU %. This is a mysql server box.

top - 16:08:48 up 185 days, 15:27, 5 users, load average: 20.60, 17.20, 13.17 Tasks: 221 total, 2 running, 219 sleeping, 0 stopped, 0 zombie Cpu0 : 90.3%us, 5.8%sy, 0.0%ni, 3.2%id, 0.6%wa, 0.0%hi, 0.0%si, 0.0%st Cpu1 : 89.1%us, 5.8%sy, 0.0%ni, 4.5%id, 0.6%wa, 0.0%hi, 0.0%si, 0.0%st Cpu2 : 86.4%us, 5.0%sy, 0.9%ni, 6.9%id, 0.6%wa, 0.0%hi, 0.0%si, 0.0%st Cpu3 : 88.1%us, 5.8%sy, 1.3%ni, 4.8%id, 0.0%wa, 0.0%hi, 0.0%si, 0.0%st Cpu4 : 89.8%us, 7.2%sy, 0.0%ni, 1.3%id, 0.0%wa, 0.0%hi, 1.6%si, 0.0%st Cpu5 : 91.0%us, 2.6%sy, 0.0%ni, 5.4%id, 1.0%wa, 0.0%hi, 0.0%si, 0.0%st Cpu6 : 91.8%us, 4.6%sy, 0.3%ni, 3.3%id, 0.0%wa, 0.0%hi, 0.0%si, 0.0%st Cpu7 : 78.8%us, 14.4%sy, 1.3%ni, 5.4%id, 0.0%wa, 0.0%hi, 0.0%si, 0.0%st Mem: 12326280k total, 12147144k used, 179136k free, 158512k buffers Swap: 8420344k total, 0k used, 8420344k free, 10731260k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 22691 root 20 0 19348 1536 1068 R 1 0.0 0:00.29 top 8723 root 20 0 19356 1556 1064 S 0 0.0 0:01.51 top 21562 zabbix 25 5 64000 1224 656 S 0 0.0 54:17.09 /usr/sbin/zabbix_agentd 21566 zabbix 25 5 63976 1132 524 S 0 0.0 151:05.16 /usr/sbin/zabbix_agentd 25165 root 20 0 18700 2744 1840 R 0 0.0 0:00.01 perl /usr/local/bin/mk-heartbeat -D utility --interval 1 --update -h rs4 --password 1 root 20 0 23708 1184 596 S 0 0.0 0:33.56 /sbin/init 2 root 20 0 0 0 0 S 0 0.0 0:00.01 [kthreadd] 3 root RT 0 0 0 0 S 0 0.0 0:34.65 [migration/0] 

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High load average, low CPU usage — why?

The applications running on this server talk with an Oracle database on a different server.

This server has 32GB of RAM and 10 CPUs (I think).

Running prstat -Z gives something like this:

 PID USERNAME SIZE RSS STATE PRI NICE TIME CPU PROCESS/NLWP 3836 ducm0101 2119M 2074M cpu348 58 0 8:41:56 0.5% java/225 24196 ducm0101 1974M 1910M sleep 59 0 4:04:33 0.4% java/209 6765 ducm0102 1580M 1513M cpu330 1 0 1:21:48 0.1% java/291 16922 ducm0102 2115M 1961M sleep 58 0 6:37:08 0.0% java/193 18048 root 3048K 2440K sleep 59 0 0:06:02 0.0% sa_comm/4 26619 ducm0101 2588M 2368M sleep 59 0 8:21:17 0.0% java/231 19904 ducm0104 1713M 1390M sleep 59 0 1:15:29 0.0% java/151 27809 ducm0102 1547M 1426M sleep 59 0 0:38:19 0.0% java/186 2409 root 15M 11M sleep 59 0 0:00:00 0.0% pkgserv/3 27204 root 58M 54M sleep 59 0 9:11:38 0.0% stat_daemon/1 27256 root 12M 8312K sleep 59 0 7:16:40 0.0% kux_vmstat/1 29367 root 297M 286M sleep 59 0 11:02:13 0.0% dsmc/2 22128 root 13M 6768K sleep 59 0 0:10:51 0.0% sendmail/1 22133 smmsp 13M 1144K sleep 59 0 0:01:22 0.0% sendmail/1 22003 root 5896K 240K sleep 59 0 0:00:01 0.0% automountd/2 22074 root 4776K 1992K sleep 59 0 0:00:19 0.0% sshd/1 22005 root 6184K 2728K sleep 59 0 0:00:31 0.0% automountd/2 27201 root 6248K 344K sleep 59 0 0:00:01 0.0% mount_stat/1 20964 root 2912K 160K sleep 59 0 0:00:01 0.0% ttymon/1 20947 root 1784K 864K sleep 59 0 0:02:22 0.0% utmpd/1 20900 root 3048K 608K sleep 59 0 0:00:03 0.0% ttymon/1 20979 root 77M 18M sleep 59 0 0:14:13 0.0% inetd/4 20849 daemon 2856K 864K sleep 59 0 0:00:03 0.0% lockd/2 17794 root 80M 1232K sleep 59 0 0:06:19 0.0% svc.startd/12 17645 root 3080K 728K sleep 59 0 0:00:12 0.0% init/1 17849 root 13M 6800K sleep 59 0 0:13:04 0.0% svc.configd/15 20213 root 84M 81M sleep 59 0 0:47:17 0.0% nscd/46 20871 root 2568K 600K sleep 59 0 0:00:04 0.0% sac/1 3683 ducm0101 1904K 1640K sleep 56 0 0:00:00 0.0% startWebLogic.s/1 23937 ducm0101 1904K 1640K sleep 59 0 0:00:00 0.0% startWebLogic.s/1 20766 daemon 5328K 1536K sleep 59 0 0:00:36 0.0% nfsmapid/3 20141 daemon 5968K 3520K sleep 59 0 0:01:14 0.0% kcfd/4 20093 ducm0101 2000K 376K sleep 59 0 0:00:01 0.0% pfksh/1 20797 daemon 3256K 240K sleep 59 0 0:00:01 0.0% statd/1 6181 root 4864K 2872K sleep 59 0 0:01:34 0.0% syslogd/17 7220 ducm0104 1268M 1101M sleep 59 0 0:36:35 0.0% java/138 27597 ducm0102 1904K 1640K sleep 59 0 0:00:00 0.0% startWebLogic.s/1 27867 root 37M 4568K sleep 59 0 0:13:56 0.0% kcawd/7 12685 ducm0101 4080K 208K sleep 59 0 0:00:01 0.0% vncconfig/1 ZONEID NPROC SWAP RSS MEMORY TIME CPU ZONE 42 135 22G 19G 59% 87:27:59 1.2% dsuniucm01 Total: 135 processes, 3167 lwps, load averages: 54.48, 62.50, 63.11 

I understand that CPU is mostly idle, but the load average is high, which is quite strange to me. Memory doesn’t seem to be a problem.

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Running vmstat 15 gives something like this:

 kthr memory page disk faults cpu r b w swap free re mf pi po fr de sr s0 s1 s4 sd in sy cs us sy id 0 0 0 32531400 105702272 317 1052 126 0 0 0 0 13 13 -0 8 9602 107680 10964 1 1 98 0 0 0 15053368 95930224 411 2323 0 0 0 0 0 0 0 0 0 23207 47679 29958 3 2 95 0 0 0 14498568 95801960 3072 3583 0 2 2 0 0 3 3 0 21 22648 66367 28587 4 4 92 0 0 0 14343008 95656752 3080 2857 0 0 0 0 0 3 3 0 18 22338 44374 29085 3 4 94 0 0 0 14646016 95485472 1726 3306 0 0 0 0 0 0 0 0 0 24702 47499 33034 3 3 94 

I understand that the CPU is mostly idle, no processes are waiting in the queue to be executed, little swapping is happening.

Running iostat 15 gives this:

 tty sd0 sd1 sd4 ssd0 cpu tin tout kps tps serv kps tps serv kps tps serv kps tps serv us sy wt id 0 676 324 13 8 322 13 8 0 0 0 159 8 0 1 1 0 98 1 1385 0 0 0 0 0 0 0 0 0 0 0 0 3 4 0 94 0 584 89 6 24 89 6 25 0 0 0 332 19 0 2 1 0 97 0 296 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 97 1 1290 43 5 24 43 5 22 0 0 0 297 20 1 3 3 0 94 

Running netstat -i 15 gives the following:

 input aggr26 output input (Total) output packets errs packets errs colls packets errs packets errs colls 1500233798 0 1489316495 0 0 3608008314 0 3586173708 0 0 10646 0 10234 0 0 26206 0 25382 0 0 11227 0 10670 0 0 28562 0 27448 0 0 10353 0 9998 0 0 29117 0 28418 0 0 11443 0 12003 0 0 30385 0 31494 0 0 

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14.04 High Load Average — but no CPU

I’ve got as system with 6 hperthreaded cores and 64Gb of RAM, just stood up 14.04 wit KVM, and I’m seeing load averages above 50, with only a VM install going on. NO high CPU, NO high I/O, just crazy load average. It also fluctuates all over. Any suggestions on where to look greatly appreciated Here’s top:

top - 15:26:40 up 1:12, 4 users, load average: 13.88, 43.19, 47.55 Tasks: 317 total, 2 running, 315 sleeping, 0 stopped, 0 zombie %Cpu(s): 0.5 us, 0.2 sy, 0.0 ni, 99.3 id, 0.0 wa, 0.0 hi, 0.0 si, 0.0 st KiB Mem: 65875788 total, 3212520 used, 62663268 free, 46440 buffers KiB Swap: 67006460 total, 0 used, 67006460 free. 930788 cached Mem PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 1799 root 20 0 967124 28012 16468 S 2.7 0.0 1:52.95 libvirtd 3117 clayj 20 0 1812296 125540 75520 S 1.3 0.2 0:47.47 compiz 3413 clayj 20 0 824264 78264 42104 S 1.0 0.1 0:42.36 python 96 root 25 5 0 0 0 S 0.7 0.0 0:14.71 ksmd 1909 root 20 0 334452 52452 32264 S 0.7 0.1 0:41.59 Xorg 2589 clayj 20 0 566476 27648 22384 S 0.7 0.0 0:26.33 psensor 3332 clayj 20 0 687624 33600 24828 S 0.7 0.1 0:58.30 psensor 25 root 20 0 0 0 0 S 0.3 0.0 0:00.79 rcuos/2 781 root 0 -20 0 0 0 S 0.3 0.0 0:07.82 kworker/4:+ 2836 clayj 20 0 40112 3452 2144 S 0.3 0.0 0:00.80 dbus-daemon 2966 clayj 20 0 492636 27664 19716 S 0.3 0.0 0:01.01 unity-pane+ 3452 libvirt+ 20 0 6976880 1.284g 16872 S 0.3 2.0 2:06.23 qemu-syste+ 8860 clayj 20 0 25076 3064 2432 R 0.3 0.0 0:02.23 top 10110 clayj 20 0 25080 3128 2496 R 0.3 0.0 0:00.14 top 1 root 20 0 34104 4700 2692 S 0.0 0.0 0:00.98 init 2 root 20 0 0 0 0 S 0.0 0.0 0:00.00 kthreadd 3 root 20 0 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/0 
clayj@VMHOST1:~$ ps ax PID TTY STAT TIME COMMAND 1 ? Ss 0:00 /sbin/init 2 ? S 0:00 [kthreadd] 3 ? S 0:00 [ksoftirqd/0] 5 ? S< 0:00 [kworker/0:0H] 7 ? S 0:04 [rcu_sched] 8 ? S 0:00 [rcu_bh] 9 ? S 0:04 [rcuos/0] 10 ? S 0:00 [rcuob/0] 11 ? S 0:00 [migration/0] 12 ? S 0:00 [watchdog/0] 13 ? S 0:00 [watchdog/1] 14 ? S 0:00 [migration/1] 15 ? S 0:00 [ksoftirqd/1] 16 ? S 0:00 [kworker/1:0] 17 ? S< 0:00 [kworker/1:0H] 18 ? S 0:00 [rcuos/1] 19 ? S 0:00 [rcuob/1] 20 ? S 0:00 [watchdog/2] 21 ? S 0:00 [migration/2] 22 ? S 0:00 [ksoftirqd/2] 23 ? S 0:00 [kworker/2:0] 24 ? S< 0:00 [kworker/2:0H] 25 ? S 0:00 [rcuos/2] 26 ? S 0:00 [rcuob/2] 27 ? S 0:00 [watchdog/3] 28 ? S 0:00 [migration/3] 29 ? S 0:00 [ksoftirqd/3] 31 ? S< 0:00 [kworker/3:0H] 32 ? S 0:03 [rcuos/3] 33 ? S 0:00 [rcuob/3] 34 ? S 0:00 [watchdog/4] 35 ? S 0:00 [migration/4] 36 ? S 0:00 [ksoftirqd/4] 37 ? S 0:00 [kworker/4:0] 38 ? S< 0:00 [kworker/4:0H] 39 ? S 0:00 [rcuos/4] 40 ? S 0:00 [rcuob/4] 41 ? S 0:00 [watchdog/5] 42 ? S 0:00 [migration/5] 43 ? S 0:00 [ksoftirqd/5] 45 ? S< 0:00 [kworker/5:0H] 46 ? S 0:00 [rcuos/5] 47 ? S 0:00 [rcuob/5] 48 ? S 0:00 [watchdog/6] 49 ? S 0:00 [migration/6] 50 ? S 0:00 [ksoftirqd/6] 51 ? S 0:00 [kworker/6:0] 52 ? S< 0:00 [kworker/6:0H] 53 ? S 0:00 [rcuos/6] 54 ? S 0:00 [rcuob/6] 55 ? S 0:00 [watchdog/7] 56 ? S 0:00 [migration/7] 57 ? S 0:00 [ksoftirqd/7] 58 ? S 0:00 [kworker/7:0] 59 ? S< 0:00 [kworker/7:0H] 60 ? S 0:00 [rcuos/7] 61 ? S 0:00 [rcuob/7] 62 ? S 0:00 [watchdog/8] 63 ? S 0:00 [migration/8] 64 ? S 0:00 [ksoftirqd/8] 65 ? S 0:00 [kworker/8:0] 66 ? S< 0:00 [kworker/8:0H] 67 ? S 0:00 [rcuos/8] 68 ? S 0:00 [rcuob/8] 69 ? S 0:00 [watchdog/9] 70 ? S 0:00 [migration/9] 71 ? S 0:00 [ksoftirqd/9] 72 ? S 0:00 [kworker/9:0] 73 ? S< 0:00 [kworker/9:0H] 74 ? S 0:00 [rcuos/9] 75 ? S 0:00 [rcuob/9] 76 ? S 0:00 [watchdog/10] 77 ? S 0:00 [migration/10] 78 ? S 0:00 [ksoftirqd/10] 79 ? S 0:00 [kworker/10:0] 80 ? S< 0:00 [kworker/10:0H] 81 ? S 0:00 [rcuos/10] 82 ? S 0:00 [rcuob/10] 83 ? S 0:00 [watchdog/11] 84 ? S 0:00 [migration/11] 85 ? S 0:00 [ksoftirqd/11] 86 ? S 0:00 [kworker/11:0] 87 ? S< 0:00 [kworker/11:0H] 88 ? S 0:00 [rcuos/11] 89 ? S 0:00 [rcuob/11] 90 ? S< 0:00 [khelper] 91 ? S 0:00 [kdevtmpfs] 92 ? S< 0:00 [netns] 93 ? S< 0:00 [perf] 94 ? S 0:00 [khungtaskd] 95 ? S< 0:00 [writeback] 96 ? SN 0:15 [ksmd] 97 ? SN 0:00 [khugepaged] 98 ? S< 0:00 [crypto] 99 ? S< 0:00 [kintegrityd] 100 ? S< 0:00 [bioset] 101 ? S< 0:00 [kblockd] 102 ? S< 0:00 [ata_sff] 103 ? S< 0:00 [md] 104 ? S< 0:00 [devfreq_wq] 105 ? S 0:00 [kworker/u24:1] 106 ? S 0:00 [kworker/0:1] 108 ? S 0:00 [kswapd0] 109 ? S< 0:00 [vmstat] 110 ? S 0:00 [fsnotify_mark] 111 ? S 0:00 [ecryptfs-kthrea] 122 ? S< 0:00 [kthrotld] 123 ? S< 0:00 [acpi_thermal_pm] 124 ? S 0:00 [kworker/11:1] 125 ? S 0:01 [kworker/4:1] 129 ? S< 0:00 [ipv6_addrconf] 150 ? S< 0:00 [deferwq] 151 ? S< 0:00 [charger_manager] 161 ? S 0:00 [kworker/7:1] 215 ? S< 0:00 [kpsmoused] 217 ? S 0:00 [scsi_eh_0] 218 ? S< 0:00 [scsi_tmf_0] 219 ? S 0:00 [kworker/u24:3] 220 ? S 0:00 [kworker/3:1] 221 ? S 0:00 [kworker/5:1] 225 ? S 0:00 [kworker/2:3] 229 ? S 0:00 [kworker/9:1] 230 ? S 0:00 [kworker/1:1] 232 ? S< 0:00 [ttm_swap] 275 ? S< 0:00 [bioset] 284 ? S 0:00 [jbd2/sda2-8] 285 ? S< 0:00 [ext4-rsv-conver] 298 ? S 0:00 [kworker/10:1] 317 ? S 0:00 [kworker/8:1] 323 ? S< 0:00 [kworker/0:1H] 465 ? S< 0:00 [kworker/2:1H] 476 ? S 0:00 upstart-udev-bridge --daemon 482 ? Ss 0:00 /lib/systemd/systemd-udevd --daemon 631 ? S< 0:00 [rpciod] 641 ? S< 0:00 [nfsiod] 644 ? S< 0:00 [edac-poller] 647 ? S 0:00 [irq/50-mei_me] 664 ? S< 0:00 [kworker/9:1H] 692 ? Ss 0:00 rpc.idmapd 694 ? Ss 0:00 dbus-daemon --system --fork 750 ? S< 0:00 [kvm-irqfd-clean] 759 ? S< 0:00 [led_workqueue] 773 ? Ss 0:00 /usr/sbin/bluetoothd 781 ? S< 0:08 [kworker/4:1H] 792 ? Ss 0:00 /lib/systemd/systemd-logind 793 ? Ssl 0:00 rsyslogd 796 ? S 0:00 avahi-daemon: running [VMHOST1.local] 801 ? S 0:00 avahi-daemon: chroot helper 814 ? S< 0:00 [krfcommd] 825 ? S 0:00 [kworker/6:3] 1003 ? S 0:00 upstart-file-bridge --daemon 1044 ? Ss 0:00 smbd -F 1051 ? Ss 0:00 rpcbind 1057 ? Ss 0:00 rpc.statd -L 1069 ? S 0:00 upstart-socket-bridge --daemon 1184 ? S 0:00 smbd -F 1205 ? Ss 0:00 /usr/sbin/winbindd -F 1212 ? Ss 0:00 nmbd -D 1220 ? S 0:00 /usr/sbin/winbindd -F 1280 ? S< 0:00 [kworker/1:1H] 1352 ? Ss 0:00 /usr/sbin/cupsd -f 1355 ? S 0:00 /usr/lib/cups/notifier/dbus dbus:// 1371 ? Ss 0:00 /usr/sbin/cups-browsed 1495 ? Ssl 0:00 /sbin/zfs-fuse --pidfile /var/run/zfs-fuse.pid 1655 tty4 Ss+ 0:00 /sbin/getty -8 38400 tty4 1659 tty5 Ss+ 0:00 /sbin/getty -8 38400 tty5 1671 tty2 Ss+ 0:00 /sbin/getty -8 38400 tty2 1672 tty3 Ss+ 0:00 /sbin/getty -8 38400 tty3 1675 tty6 Ss+ 0:00 /sbin/getty -8 38400 tty6 1713 ? Ss 0:00 atd 1720 ? Ss 0:00 /usr/sbin/sshd -D 1729 ? Ss 0:00 cron 1736 ? Ss 0:00 /usr/sbin/irqbalance 1752 ? Ss 0:00 /usr/sbin/kerneloops 1757 ? Ssl 0:00 whoopsie 1799 ? Sl 1:55 /usr/sbin/libvirtd -d 1812 ? S 0:00 [kauditd] 1828 ? S 0:06 Xtightvnc :1 -desktop X -auth /home/clayj/.Xauthority 1832 ? Ss 0:00 acpid -c /etc/acpi/events -s /var/run/acpid.socket 1874 ? SLsl 0:00 lightdm 1909 tty7 Ss+ 0:42 /usr/bin/X -core :0 -seat seat0 -auth /var/run/lightd 1912 ? Sl 0:00 /usr/lib/accountsservice/accounts-daemon 1917 ? Sl 0:00 /usr/lib/policykit-1/polkitd --no-debug 1997 ? S 0:00 /usr/sbin/dnsmasq --conf-file=/var/lib/libvirt/dnsmas 2047 ? Sl 0:00 lightdm --session-child 12 19 2080 ? Sl 0:00 /usr/lib/upower/upowerd 2127 ? SNl 0:00 /usr/lib/rtkit/rtkit-daemon 2207 ? Sl 0:00 /usr/lib/colord/colord 2426 ? S 0:00 /bin/sh /etc/xdg/xfce4/xinitrc -- /etc/X11/xinit/xser 2478 tty1 Ss+ 0:00 /sbin/getty -8 38400 tty1 2485 ? Sl 0:00 xfce4-session 2488 ? S 0:00 /usr/bin/dbus-launch --sh-syntax --exit-with-session 2489 ? Ss 0:00 //bin/dbus-daemon --fork --print-pid 5 --print-addres 2492 ? S 0:00 /usr/lib/x86_64-linux-gnu/xfce4/xfconf/xfconfd 2496 ? Ss 0:00 /usr/bin/ssh-agent -s 2497 ? S 0:00 xfwm4 --display :1.0 --sm-client-id 2ddf16273-8e68-45 2499 ? S 0:00 Thunar --sm-client-id 228ae608a-5313-4a9f-b01f-fe6641 2500 ? Sl 0:00 xfce4-panel --display :1.0 --sm-client-id 2c3329af8-c 2502 ? Sl 0:00 xfdesktop --display :1.0 --sm-client-id 26d147f7b-050 2503 ? Ssl 0:00 xfsettingsd --display :1.0 --sm-client-id 26e3e62d0-a 2507 ? Sl 0:00 /usr/lib/gvfs/gvfsd 2511 ? Sl 0:00 /usr/lib/gvfs/gvfsd-fuse /run/user/1000/gvfs -f -o bi 2522 ? Ssl 0:00 xfce4-power-manager --restart --sm-client-id 2cb8dec7 2524 ? Sl 0:00 update-notifier 2526 ? Sl 0:00 /usr/lib/x86_64-linux-gnu/indicator-sound/indicator-s 2528 ? Sl 0:00 zeitgeist-datahub 2531 ? Sl 0:00 /usr/lib/at-spi2-core/at-spi-bus-launcher 2536 ? S 0:00 xscreensaver -no-splash 2541 ? S 0:00 /bin/dbus-daemon --config-file=/etc/at-spi2/accessibi 2544 ? Sl 0:00 /usr/lib/x86_64-linux-gnu/indicator-bluetooth/indicat 2546 ? Sl 0:00 /usr/bin/python /usr/share/system-config-printer/appl 2549 ? Sl 0:00 /usr/lib/at-spi2-core/at-spi2-registryd --use-gnome-s 2553 ? S 

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How to troubleshoot high load, when there are no obvious processes [duplicate]

I'm running Ubuntu 13.10 on a laptop. Recently, after waking from sleep, I noticed the computer was quite warm, checked top and discovered 1.00 load average. I shutdown Chrome, various daemons, no effect. I rebooted and fired up a terminal and checked top again, and watched the load quickly spike to 1.75, and slowly settle down back to around 1.0 - 1.2:

top - 09:49:17 up 36 min, 2 users, load average: 1.01, 1.10, 1.01 Tasks: 267 total, 1 running, 266 sleeping, 0 stopped, 0 zombie %Cpu(s): 0.9 us, 0.4 sy, 0.0 ni, 98.6 id, 0.0 wa, 0.0 hi, 0.0 si, 0.0 st KiB Mem: 8069288 total, 2885572 used, 5183716 free, 123652 buffers KiB Swap: 7711332 total, 0 used, 7711332 free, 1661816 cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 1420 root 20 0 589m 144m 131m S 3.4 1.8 0:36.49 Xorg 6233 user1 20 0 986m 83m 31m S 2.7 1.1 0:19.89 chrome 3708 user1 20 0 749m 19m 12m S 1.8 0.3 0:06.58 gnome-terminal 3526 user1 20 0 1350m 67m 28m S 1.4 0.9 0:26.19 compiz 4014 user1 20 0 1022m 126m 52m S 1.1 1.6 0:44.34 chrome 
sudo cat /proc/loadavg 1.20 1.16 0.99 3/614 6254 
avg-cpu: %user %nice %system %iowait %steal %idle 0.63 0.00 0.13 0.00 0.00 99.25 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await r_await w_await svctm %util sda 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 scd0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 
 total used free shared buffers cached Mem: 7880 2841 5039 0 120 1651 -/+ buffers/cache: 1068 6811 Swap: 7530 0 7530 

Clearly some process is saturating CPU, but it doesn't seem to show up on the process list. Some sort of hidden Linux filesystem checker? Rootkit? Any ideas how to find the process in question?

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